[46] Berry DA, Iversen ES, Gudbjartsson DF, Hiller EH, Garber JE, Peshkin BN, Lerman C, Watson P,
Lynch HT, Hilsenbeck SG, Rubinstein WS, Hughes KS, Parmigiani G.
BRCAPRO validation, sen-
sitivity of genetic testing of BRCA1/BRCA2, and prevalence of other breast cancer susceptibility
genes.
J Clin Oncol 20; 2701–2712 Jun 2002.
[47] Carota C, Parmigiani G.
Semiparametric regression for count data
. Biometrika 2; 265–281 2002.
[48] Kauff ND, Perez-Segura P, Robson ME, Scheuer L, Siegel B, Schluger A, Rapaport B, Frank TS,
Nafa K, Ellis NA, Parmigiani G, Offit K.
Incidence of non-founder BRCA1 and BRCA2 mutations
in high risk Ashkenazi breast and ovarian cancer families.
J Med Genet 39; 611–614 Aug 2002.
[49] Symer DE, Connelly C, Szak ST, Caputo EM, Cost GJ, Parmigiani G, Boeke JD.
Human L1
retrotransposition is associated with genetic instability in vivo.
Cell 110; 327–338 Aug 2002.
[50] Inoue LYT, Parmigiani G.
Designing follow–up times
. JASA 97; 847–858 2002.
[51] Parmigiani G, Garrett ES, Anbazhagan R, Gabrielson E.
A statistical framework for expression-
based molecular classification in cancers
. Journal of the Royal Statistical Society Series B 64;
717–736 2002.
[52] Parmigiani G.
Measuring uncertainty in complex decision analysis models.
Stat Methods Med Res
11; 513–537 Dec 2002.
[53] Marroni F, Aretini P, Bailey-Wilson J, Parmigiani G, Bevilacqua G, Presciuttini S. Performance of
different models predicting bfica-mutation carrier status in 570 italian families. American Journal
of Human Genetics 71(4); 348 2002.
[54] Balding, J. D, Carothers AD, Marchini JL, Cardon LR, Vetta A, Griffiths B, Weir BS, Hill WG,
Goldstein D, Strimmer K, Myers S, Beaumont MA, Glasbey CA, Mayer CD, Durrett R, Nielsen
R, Visscher PM, Knott SA, Haley CS, Ball RD, Hackett CA, Holmes S, Husmeier D, Jansen RC,
Braak CJFT, Maliepaard CA, Boer MP, Joyce P, Li N, Stephens M, Marcoulides GA, Drezner Z,
Mardia K, McVean G, Meng XL, Ochs MF, Pagel M, Sha N, Vannucci M, Sillanp MJ, Sisson S,
Yandell BS, Jin C, Satagopan JM, Gaffney PJ, Zeng ZB, Broman KW, Speed TP, Fearnhead P,
Donnelly P, Larget B, Simon DL, Kadane JB, Nicholson G, Smith AV, Jnsson F, mar Gstafsson,
Stefnsson K, Parmigiani G, Garrett ES, Anbazhagan R, Gabrielson. E. Discussion on the meeting on
’statistical modelling and analysis of genetic data’@articleScharpf2009, author = Scharpf, Robert
B. and Tjelmeland, H˚
akon and Parmigiani, Giovanni and Nobel, Andrew, title = A Bayesian model
for cross-study differential gene expression, journal = JASA, year = 2009, volume = 104 (488),
pages = 1295-1310, note = PMCID: PMC2994029 . Journal of the Royal Statistical Society
Series B Statistical Methodology 64; 737–775 2002.
[55] Scharpf R, Garrett ES, Hu J, Parmigiani G.
Statistical modeling and visualization of molecular
profiles in cancer.
Biotechniques Suppl; 22–29 Mar 2003.
[56] Bardelli A, Parsons DW, Silliman N, Ptak J, Szabo S, Saha S, Markowitz S, Willson JKV, Parmi-
giani G, Kinzler KW, Vogelstein B, Velculescu VE.
Mutational analysis of the tyrosine kinome in
colorectal cancers.
Science 300(5674); 949 May 2003.
[57] Cappola TP, Cope L, Cernetich A, Barouch LA, Minhas K, Irizarry RA, Parmigiani G, Durrani S,
Lavoie T, Hoffman EP, Ye SQ, Garcia JGN, Hare JM.
Deficiency of different nitric oxide synthase
isoforms activates divergent transcriptional programs in cardiac hypertrophy.
Physiol Genomics
14; 25–34 Jun 2003.
7
[58] Chowers I, Liu D, Farkas RH, Gunatilaka TL, Hackam AS, Bernstein SL, Campochiaro PA, Parmi-
giani G, Zack DJ.
Gene expression variation in the adult human retina.
Hum Mol Genet 12;
2881–2893 Nov 2003.
[59] Parmigiani G, Ashih H, Samsa G, Duncan P, Lai S, Matchar D.
Cross-calibration of stroke disability
measures: Bayesian analysis of longitudinal ordinal categorical data using negative dependence
.
Journal of the American Statistical Association 98(462); 273–281 2003.
[60] Dang LH, Bettegowda C, Agrawal N, Cheong I, Huso D, Frost P, Loganzo F, Greenberger L,
Barkoczy J, Pettit GR, Smith AB, Gurulingappa H, Khan S, Parmigiani G, Kinzler KW, Zhou
S, Vogelstein B.
Targeting vascular and avascular compartments of tumors with c. novyi-nt and
anti-microtubule agents.
Cancer Biol Ther 3; 326–337 Mar 2004.
[61] Wang TL, Diaz LA, Romans K, Bardelli A, Saha S, Galizia G, Choti M, Donehower R, Parmi-
giani G, Shih IM, Iacobuzio-Donahue C, Kinzler KW, Vogelstein B, Lengauer C, Velculescu VE.
Digital karyotyping identifies thymidylate synthase amplification as a mechanism of resistance to
5-fluorouracil in metastatic colorectal cancer patients.
Proc Natl Acad Sci U S A 101; 3089–3094
Mar 2004. PMC420348.
[62] Marroni F, Aretini P, D’Andrea E, Caligo MA, Cortesi L, Viel A, Ricevuto E, Montagna M,
Cipollini G, Federico M, Santarosa M, Marchetti P, Bailey-Wilson JE, Bevilacqua G, Parmigiani
G, Presciuttini S.
Penetrances of breast and ovarian cancer in a large series of families tested for
BRCA1/2 mutations.
Eur J Hum Genet 12; 899–906 Nov 2004.
[63] Marroni F, Aretini P, D’Andrea E, Caligo MA, Cortesi L, Viel A, Ricevuto E, Montagna M, Cipollini
G, Ferrari S, Santarosa M, Bisegna R, Bailey-Wilson JE, Bevilacqua G, Parmigiani G, Presciuttini
S.
Evaluation of widely used models for predicting BRCA1 and BRCA2 mutations.
J Med Genet
41; 278–285 Apr 2004. PMC1735736.
[64] Parmigiani G, Garrett E, Anbazhagan R, Gabrielson E. Molecular classification of lung cancer: a
cross-platform comparison of gene expression data sets. Chest 125; 103S May 2004.
[65] Mehrotra J, Ganpat MM, Kanaan Y, Fackler MJ, McVeigh M, Lahti-Domenici J, Polyak K, Argani
P, Naab T, Garrett E, Parmigiani G, Broome C, Sukumar S.
Estrogen receptor/progesterone
receptor-negative breast cancers of young african-american women have a higher frequency of
methylation of multiple genes than those of caucasian women.
Clin Cancer Res 10; 2052–2057
Mar 2004.
[66] Parmigiani G, Garrett-Mayer ES, Anbazhagan R, Gabrielson E.
A cross-study comparison of gene
expression studies for the molecular classification of lung cancer.
Clin Cancer Res 10; 2922–2927
May 2004.
[67] Wang Z, Shen D, Parsons DW, Bardelli A, Sager J, Szabo S, Ptak J, Silliman N, Peters BA, van der
Heijden MS, Parmigiani G, Yan H, Wang TL, Riggins G, Powell SM, Willson JKV, Markowitz S,
Kinzler KW, Vogelstein B, Velculescu VE.
Mutational analysis of the tyrosine phosphatome in
colorectal cancers.
Science 304; 1164–1166 May 2004.
[68] Parmigiani G.
Uncertainty and the value of diagnostic information, with application to axillary
lymph node dissection in breast cancer.
Stat Med 23; 843–855 Mar 2004.
[69] Hackam AS, Qian J, Liu D, Gunatilaka T, Farkas RH, Chowers I, Kageyama M, Parmigiani G,
Zack DJ.
Comparative gene expression analysis of murine retina and brain.
Mol Vis 10; 637–649
Aug 2004.
8